`add_dephosphorylated_5p_terminus`

openff.pablo.ccd.patches.add_dephosphorylated_5p_terminus(res: ResidueDefinition) → list[ResidueDefinition][source]

Add a definition representing a dephosphorylated 5’ nucleic acid terminus.

Assumes the phosphate has the standard CCD nucleic acid atom names: “P”, “HOP2”, “HOP3”, “OP1”, “OP2”, and “OP3”.